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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33647488_33650005_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33647488 - 33650005
Intron Length:
2518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTCCTGATT
Flanking Amino Acid:
DIVIFLACEQEIEKAYQIIK
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
100
1.24
0.5
100
0
Major PPT
75.4
0.57
0.9
68.3
36.2
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
59.7
0.39
1.6
80.99
34.3

Associated Gene:

Gene:
DHX32
Ensembl Gene ID:
ENSAPLG00000012133
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012650
33631454 - 33655961
24508