About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33650379_33651828_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33650379 - 33651828
Intron Length:
1450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGCG
5'SS Class:
major
3'SS Sequence:
TTGCATGGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTGTTTGCATG
Flanking Amino Acid:
ESCCSTETILRYCTDDMLQR
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
63.6
40.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
67.3
0.39
1.1
61.4
44.2
Minor 5ss
35.5
-1.7
2.9
42
44.7
Minor BPS
42.1
-0.7
1.9
46.39
41.8

Associated Gene:

Gene:
DHX32
Ensembl Gene ID:
ENSAPLG00000012133
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012650
33631454 - 33655961
24508