About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33652023_33655200_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33652023 - 33655200
Intron Length:
3178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCACTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TTCTTGTTCACT
Flanking Amino Acid:
GDAKTGKSSQIPQWCAEYCL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.9
30.1
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
76.3
0.59
0.9
69.5
35.8
Minor 5ss
33.9
-1.8
2.8
41.5
45.1
Minor BPS
51.4
0.12
2.4
78.66
44.1

Associated Gene:

Gene:
DHX32
Ensembl Gene ID:
ENSAPLG00000012133
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012650
33631454 - 33655961
24508