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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33681279_33681890_F

Intron Information:

Intron Rank:
126370
Intron Class:
major
Intron Phase:
Intron Coordinates:
33681279 - 33681890
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CCCACTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TGTTTTGTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
71.9
0.49
0.9
67.9
37.5
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
46.5
-0.2
2.1
61.73
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018085
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023768
33681269 - 33683782
2514