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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33681960_33683771_F

Intron Information:

Intron Rank:
126371
Intron Class:
major
Intron Phase:
Intron Coordinates:
33681960 - 33683771
Intron Length:
1812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTACTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTCTTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84
0.77
0.8
77.4
36
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
68.5
0.44
1.6
74.98
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018085
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023768
33681269 - 33683782
2514