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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33681960_33683816_F

Intron Information:

Intron Rank:
126372
Intron Class:
major
Intron Phase:
Intron Coordinates:
33681960 - 33683816
Intron Length:
1857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGCACTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATTAGCATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
65.7
0.35
0.9
62.1
39.7
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
49.8
-0
2
67.61
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018085
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028840
33681918 - 33686247
4330