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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33686575_33688880_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33686575 - 33688880
Intron Length:
2306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTTAAATAACC
Flanking Amino Acid:
TKAVPPITPVRPAPKHPPHV
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
30.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81
0.7
0.8
77.7
29.7
Minor 5ss
39.2
-1.2
2.7
51.6
44.8
Minor BPS
51
0.01
2.1
71.12
39

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180