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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33689009_33694618_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33689009 - 33694618
Intron Length:
5610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCACA
5'SS Class:
major
3'SS Sequence:
TGTTTTATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTTTTATAACA
Flanking Amino Acid:
PANPSLRFSQENHKPNPPRK
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
71.6
40.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.4
0.64
1
74.5
38.9
Minor 5ss
45.2
-0.5
2.6
58.9
45.3
Minor BPS
65.6
0.49
1.6
76.59
34

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180