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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33695369_33696032_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33695369 - 33696032
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATCA
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TGTTCAATACAT
Flanking Amino Acid:
TSKKTTIEKLRSVSPTRPSS
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.1
31.9
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
76.7
0.6
0.9
69.7
40.3
Minor 5ss
44.3
-0.6
2.8
57.2
47.1
Minor BPS
46.6
-0.1
2.2
72.73
43.2

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180