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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33701760_33704758_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33701760 - 33704758
Intron Length:
2999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTTTCCTTATTT
Flanking Amino Acid:
LSGTKCEDGKICLNRRCQNT
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
76.7
33.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.3
0.8
0.8
79.9
31.7
Minor 5ss
43
-0.8
3.3
59.1
40
Minor BPS
74.6
0.85
1.6
87.57
38.6

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180