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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33704958_33705072_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33704958 - 33705072
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTAACA
Flanking Amino Acid:
SKSSFAKCEPRDAKCGKIQC
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.1
38.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.6
0.76
0.8
81.3
30.7
Minor 5ss
38
-1.4
3.6
56.2
48.2
Minor BPS
79.6
0.93
1.5
87.53
29.4

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180