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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33705182_33712432_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33705182 - 33712432
Intron Length:
7251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
GGTTTCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AAGTTCTGACTA
Flanking Amino Acid:
EQQCITLWGQGAKPAPGICF
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
62.3
43.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
77.3
0.61
1
73.4
41.9
Minor 5ss
28.7
-2.4
2.7
25.5
36.2
Minor BPS
47.8
-0.1
1.7
55.16
37.9

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180