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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33712629_33714022_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33712629 - 33714022
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACTGA
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATTGGAACGACA
Flanking Amino Acid:
AHGLCCEDCKLKPAGISCRE
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
64.4
38.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
37.1
-1.5
3.1
47.1
48.3
Minor BPS
36.5
-1
2.2
51.16
40

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180