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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33719191_33736478_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33719191 - 33736478
Intron Length:
17288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGAATT
Flanking Amino Acid:
KGGCIMNPSTGYPFPMVFSS
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
70.9
0.73
1.7
90.49
32.8

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180