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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33744649_33745557_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33744649 - 33745557
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTCTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TGATCCTTTATT
Flanking Amino Acid:
ELVIVADNREFQRQGKDVEK
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
76.2
0.65
1
67
39.8
Major PPT
77.5
0.62
1
82.9
32.3
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
69.6
0.7
1.6
81.77
39.4

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180