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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33763059_33766629_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33763059 - 33766629
Intron Length:
3571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTAATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
TDVVLSRNYTGHCYYHGNVQ
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.6
0.78
0.9
86.5
31.5
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180