About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33766709_33821905_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33766709 - 33821905
Intron Length:
55197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TTAATATTACCT
Flanking Amino Acid:
KHLVIQLERNEGLLASSFTE
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.6
36.4
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
32.8
-2
2.6
34.8
34.3
Minor BPS
51.6
0.13
1.9
74.55
41.8

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180