About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33821980_33850706_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33821980 - 33850706
Intron Length:
28727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TGGTTTTGGACT
Flanking Amino Acid:
WRPANNIYSENHPTLLQVVV
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
85.8
0.8
0.7
80.4
24.8
Minor 5ss
36.5
-1.5
3
50.8
45.5
Minor BPS
56.3
0.28
1.5
71.61
39.7

Associated Gene:

Gene:
ADAM12
Ensembl Gene ID:
ENSAPLG00000011037
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011573
33686514 - 33867693
181180