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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33881376_33882216_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33881376 - 33882216
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
ACTATCTTAAGG
Flanking Amino Acid:
NRLRVEIFKKQLLDQLLQRN
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
54.5
0
1.8
57.72
44

Associated Gene:

Gene:
C10orf90
Ensembl Gene ID:
ENSAPLG00000010978
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040054
33881337 - 33944142
62806
ENSAPLT00000011419
33881337 - 33942385
61049