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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33882317_33883153_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33882317 - 33883153
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCCA
5'SS Class:
major
3'SS Sequence:
AAATTCATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ACTTTCCAAATT
Flanking Amino Acid:
PEKEMHMRSKRIYDNLPEVK
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.1
39.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
70.5
0.46
1
60.1
44.8
Minor 5ss
40.7
-1
2.7
51.5
44.8
Minor BPS
49.3
0.03
2
70.09
41.5

Associated Gene:

Gene:
C10orf90
Ensembl Gene ID:
ENSAPLG00000010978
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047003
33882154 - 33944142
61989
ENSAPLT00000040054
33881337 - 33944142
62806
ENSAPLT00000011419
33881337 - 33942385
61049