About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33883218_33892948_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33883218 - 33892948
Intron Length:
9731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTAATATTAACT
Flanking Amino Acid:
KQYTIPHPLSDNLFKPKERF
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
75.4
37.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
70.7
0.47
0.9
65.6
36.1
Minor 5ss
40
-1.1
2.8
50
46.3
Minor BPS
59.4
0.37
1.7
74.55
41.8

Associated Gene:

Gene:
C10orf90
Ensembl Gene ID:
ENSAPLG00000010978
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047003
33882154 - 33944142
61989
ENSAPLT00000040054
33881337 - 33944142
62806
ENSAPLT00000011419
33881337 - 33942385
61049