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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33893151_33894060_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33893151 - 33894060
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAAGT
Flanking Amino Acid:
ERPPTPLTLKEALEIHKPQF
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.2
0.57
0.9
74.3
35.6
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
65.6
0.57
2
86.99
39.2

Associated Gene:

Gene:
C10orf90
Ensembl Gene ID:
ENSAPLG00000010978
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047003
33882154 - 33944142
61989
ENSAPLT00000040054
33881337 - 33944142
62806
ENSAPLT00000011419
33881337 - 33942385
61049