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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33894252_33896174_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33894252 - 33896174
Intron Length:
1923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
AAATCTCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTAATGAACT
Flanking Amino Acid:
NVHRQNQLLKSDYESCGSSG
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
72.8
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
62.4
0.28
1.1
61.4
39.2
Minor 5ss
38.7
-1.3
3.3
50
41
Minor BPS
56.7
0.29
1.9
79.51
41.8

Associated Gene:

Gene:
C10orf90
Ensembl Gene ID:
ENSAPLG00000010978
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047003
33882154 - 33944142
61989
ENSAPLT00000040054
33881337 - 33944142
62806
ENSAPLT00000011419
33881337 - 33942385
61049