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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33911310_33913280_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33911310 - 33913280
Intron Length:
1971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTTGATAATT
Flanking Amino Acid:
AVERKSSSMEESLSSTSTKL
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.9
0.7
85.3
28
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
47.9
-0
2.2
70.45
41.1

Associated Gene:

Gene:
C10orf90
Ensembl Gene ID:
ENSAPLG00000010978
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047003
33882154 - 33944142
61989
ENSAPLT00000040054
33881337 - 33944142
62806
ENSAPLT00000011419
33881337 - 33942385
61049