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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34021624_34034028_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34021624 - 34034028
Intron Length:
12405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CATGTGCTAACA
Flanking Amino Acid:
PTKREEKYGVALYNYDARGP
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
83.7
0.76
0.9
77
37.2
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
43.4
-0.5
2.3
56.24
43.1

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069