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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34034113_34038002_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34034113 - 34038002
Intron Length:
3890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
AACACTTCAACG
Flanking Amino Acid:
DTVHILETYEGWYRGYTLRK
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
84.1
0.77
0.7
77.9
30.9
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
49.6
-0.1
1.6
52.07
42.3

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069