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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34038044_34039749_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34038044 - 34039749
Intron Length:
1706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAAATAACT
Flanking Amino Acid:
GYTLRKKSKKGIFPASYIHL
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
65.9
0.36
1
66.4
27.2
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
52.5
0.16
2.1
81.52
38.8

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069