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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34041378_34044880_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34041378 - 34044880
Intron Length:
3503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CCCCTCCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TCAGAACTAACT
Flanking Amino Acid:
WSIIWRQLYVQDNREMFRSV
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
69.6
34.4
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
62.9
0.29
0.9
57.8
30.8
Minor 5ss
34.1
-1.8
2.7
44.2
37.1
Minor BPS
44.4
-0.3
2.1
63.95
45.5

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069