Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34045030_34048117_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34045030 - 34048117

Intron Length:

3088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTGAG

5'SS Class:

major

3'SS Sequence:

TGGTTTTGTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAA

U12 Branch Point Sequence:

GCATTGTTAACT

Flanking Amino Acid:

KVTAKIDYGNRILDLDLVVR

Intron Amino Acid Position:

158

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.57

1.2

66.1

39.4

Major BPS

72.1

0.55

1.2

63.7

43.9

Major PPT

78.2

0.64

76.9

42.1

Minor 5ss

34.5

-1.8

2.9

40.4

45.9

Minor BPS

57.1

0.3

2.1

72.9

43.9

Associated Gene:

Gene:

DOCK1

Ensembl Gene ID:

ENSAPLG00000010685

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011140

34021578 - 34278646

257069