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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34048254_34049703_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34048254 - 34049703
Intron Length:
1450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATGC
5'SS Class:
major
3'SS Sequence:
TCTTCAATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CGTTCTTCAATT
Flanking Amino Acid:
QVEERLLEEKSQKQNIDINR
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.7
36.1
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
80.5
0.69
0.9
73.8
34.5
Minor 5ss
40
-1.1
3.1
51.1
39.8
Minor BPS
64.3
0.53
1.5
76.63
40.5

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069