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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34049862_34050432_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34049862 - 34050432
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
AAGTCTTCAAAA
Flanking Amino Acid:
LYDPLESKFISENYLVRWSS
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
84.7
0.78
0.8
81.7
35.4
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
52.9
0.09
1.6
60.72
38.9

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069