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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34050515_34050941_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34050515 - 34050941
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTAATATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTATTGTAAAGT
Flanking Amino Acid:
RLHNLRAVFTDLGSKDLKRD
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
73.1
43.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
71.4
0.48
0.9
62.7
43
Minor 5ss
38.3
-1.3
3
51.2
45.1
Minor BPS
46.1
-0.2
2.5
71.66
45.5

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069