About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34051078_34051423_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
34051078 - 34051423
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTCT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
AGATCATTAAAT
Flanking Amino Acid:
SGLRRPFGVAVMDVTDIING
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
72.3
40.1
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
57.2
0.24
2.5
74.8
41.2
Minor BPS
61.1
0.43
1.7
75.47
40

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069