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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34051497_34053685_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34051497 - 34053685
Intron Length:
2189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
GTTTTTCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CGTTTTTCACCC
Flanking Amino Acid:
EDKQHFIPFQPVAGENDFLQ
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.4
64
47.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.4
0.62
0.9
70.3
40.4
Minor 5ss
37
-1.5
2.7
47.1
41.6
Minor BPS
47.8
-0.1
1.8
58.24
41.2

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069