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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34053766_34056014_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34053766 - 34056014
Intron Length:
2249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGTACT
5'SS Class:
major
3'SS Sequence:
TTTTACACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTACACAACA
Flanking Amino Acid:
AAKEVNHKGQGLWVTLKLLP
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.4
Major BPS
80
0.75
1
78.6
31
Major PPT
73.1
0.52
1
67.9
37.3
Minor 5ss
36.9
-1.5
3
43.9
43.4
Minor BPS
57.2
0.22
2
78.31
37.5

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069