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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34056141_34057325_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34056141 - 34057325
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
TTGTTGCTGACT
Flanking Amino Acid:
KMGFPEIIMPGDVRNDIYVT
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
41.1
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
45.7
-0.5
2.9
61.8
44.9
Minor BPS
48.1
-0
2.3
75.11
42.1

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069