About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34057849_34058996_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
34057849 - 34058996
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATATA
5'SS Class:
strong_major
3'SS Sequence:
CCAATATGTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTTCTCCATCT
Flanking Amino Acid:
KQPRWFETVKVAIPIEDVNR
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
82.1
30.4
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
52.9
0.07
1.2
52.4
40.6
Minor 5ss
44.8
-0.6
2.7
59.5
45.1
Minor BPS
47.9
-0
2.1
72.66
44.4

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069