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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34059070_34060504_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34059070 - 34060504
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
FTFRHRSSQDSKDKSEKIFA
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.4
34
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
34.9
-1.7
3
52.2
44.4
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069