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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34060609_34061064_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34060609 - 34061064
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAATTT
5'SS Class:
major
3'SS Sequence:
AACACTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTGTATTTAAAA
Flanking Amino Acid:
DGEHDLIVYKAEAKKLEDAS
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
74.9
36.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
63
0.29
1
54.6
40.4
Minor 5ss
41.8
-0.9
3.5
64.3
47.2
Minor BPS
64
0.44
1.6
73.54
38.1

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069