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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34061249_34065769_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34061249 - 34065769
Intron Length:
4521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCACTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTCCTTCACT
Flanking Amino Acid:
LVCSTKLTQNVDLLGLLKWR
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
70.6
0.46
0.8
62.2
33.6
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
84.6
1.17
1.6
100
28.8

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069