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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34082507_34083885_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34082507 - 34083885
Intron Length:
1379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
GTATGCTTAATA
Flanking Amino Acid:
VKLVFDPKELSKLFTEFILN
Intron Amino Acid Position:
818

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
74.8
0.56
0.9
70.3
35.4
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
65.8
0.49
1.8
73.02
39

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069