About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34090635_34092435_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34090635 - 34092435
Intron Length:
1801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTTAGTATC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTCATTTATT
Flanking Amino Acid:
ILEVLYKKDVGPTQRHVQII
Intron Amino Acid Position:
897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
79.1
34.4
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
84.5
0.78
0.6
84.9
22.8
Minor 5ss
36.8
-1.5
2.7
44.7
36.8
Minor BPS
55.4
0.25
1.9
74.1
42.9

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069