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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34157270_34163799_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34157270 - 34163799
Intron Length:
6530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTCCAAATAT
Flanking Amino Acid:
TFGKMRSDVVDFLMETFIMF
Intron Amino Acid Position:
963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
81.6
0.71
0.8
80.5
31.5
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
48.4
-0
2.2
78.32
43.5

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069