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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34198528_34201731_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34198528 - 34201731
Intron Length:
3204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTAAAAAAT
Flanking Amino Acid:
SSAKRAKILNKYGDMRRQIG
Intron Amino Acid Position:
1054

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.2
36.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.2
0.7
0.9
86.4
25
Minor 5ss
38.6
-1.3
3
52.1
38.3
Minor BPS
46.5
-0.1
2.2
75.15
41.1

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069