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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34201791_34208723_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34201791 - 34208723
Intron Length:
6933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTCAT
U12 Branch Point Sequence:
TTTCTCTTTACA
Flanking Amino Acid:
FEIRDMWYNLGQHKIKFIPE
Intron Amino Acid Position:
1074

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
72.4
0.56
1.2
75
39.9
Major PPT
92.5
0.96
0.6
87.6
22.6
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
69.4
0.6
1.6
80.69
34.2

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069