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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34208873_34218034_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34208873 - 34218034
Intron Length:
9162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTAATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTTTGTTTAATT
Flanking Amino Acid:
EFHFTRSFQMFENEIITKLD
Intron Amino Acid Position:
1124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
77
0.61
0.9
71.5
38.4
Minor 5ss
41.2
-1
2.9
54.6
44.5
Minor BPS
67.8
0.64
1.8
82.98
39.3

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069