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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34218121_34218306_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34218121 - 34218306
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTGGCTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
GTGTGATTAACA
Flanking Amino Acid:
DEQYKVLFDKILLEHCRKHK
Intron Amino Acid Position:
1152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
78.2
0.64
0.9
73.9
41.1
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
55.6
0.17
2.1
69.37
42.6

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069