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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34223054_34226550_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34223054 - 34226550
Intron Length:
3497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTATGATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTTTCACTT
Flanking Amino Acid:
TLLLHAKLLKWSEEACAAHL
Intron Amino Acid Position:
1249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.9
0.38
1
61.9
38.7
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
49.9
0.08
1.8
70.83
41.3

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069