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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34241379_34241526_F

Intron Information:

Intron Rank:
41
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
34241379 - 34241526
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATCCTTG
5'SS Class:
strong_minor
3'SS Sequence:
CCCCTGAATTCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CAGTTCTTAACC
Flanking Amino Acid:
GDDIKNSSGQYIQCFTVKPK
Intron Amino Acid Position:
1401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.7
-0
1.3
46.2
44.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
65.5
0.35
1
61.7
37.8
Minor 5ss
88.7
1.3
1.2
81.9
38.3
Minor BPS
72.2
0.68
1.3
70.83
40.7

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069