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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34241606_34241879_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34241606 - 34241879
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTACTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCCCTTACTT
Flanking Amino Acid:
FHRPVSEQIVSFYRVNEVQR
Intron Amino Acid Position:
1427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.8
0.67
0.8
77.4
29.8
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
73.6
0.82
1.6
89.41
35.2

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069